semeiotica
recombining contemporary art, design strategy and life science

Archive for biotechnology

minorty report: scanner ants

scanner ants


The CEMA homepage is showing an image of scanner that has opportunistically been colonized by ants (anyone know which species?). I was present at the offending attack, and I have this to say. I didn’t see it so much as an attack as it was (more perversely) an underanticipated observation that ants had quietly moved into an (apparently) unused and undisturbed piece of late 20th century technology- that of the document scanner.

While this may have been felt by some as an attack on our morals of human-hood and right-living (ants and scanners shouldn’t mix, right…er…right?), to me this was much more the most delicate and profound expression not of nature but of the social world in which we live. The most amazing thing to me is that a colony of ants could have arrived and decided that a scanner would make a good home. Perhaps there were some legacy muffins adding allure to the crystal glass and step-motor, but maybe the ants were looking for something held up in the ambient waves of electrical heat left over from un-nourished scans of students’ faces, buttocks, book chapters, and collages.

No..I think this is exactly where we want to be…where mixes and happenstances converge out of nothing more than the desire to find place, continence in the “other”, and the cheap thrill of being where you aren’t supposed to.

On checking up on their status, they are gone from the scanner…pupae and all. I’m not sure if they left on their own accord or if they were kicked out. Where did they go? The water cooler perhaps? As for next time, I’m keeping my fingers crossed that discovery doesn’t correlate with disentanglement. I’d like to keep my scanner ants…who knows…they may have figured out something that we haven’t.

Signals, Truth & Design

Vision for Future Interactions

I was up this morning thinking about the kinds of spaces, communities and interactions I would like to see.  Somewhere between physical computing, synthetic biology, evolutionary ecology, and design is a space where species can speak and be recognized by each other, where urban infrastructure becomes adaptive in the space of days and not decades, where the threshold of difference is lowered to such a degree that new networks between otherwise unrelated groups and individuals can find common ground.

Perhaps for the first time, I am beginning to see how things can be connected for the purpose of builing empathy.  Whereas previously, I think the difficult work of etting to know a species was largely out of many peoples’ desires and time banks, perhaps there are now ways of making the opportunities both immediate and resource-efficient.

Rather than always seeking to decouple tightly-linked host-parasite relationships, can we find ways to make new ones…perhaps ones that can grow into mutualisms and symbioses?  Is hardwiring a step in the process?  What are the costs, benefits, sources and sinks?  Can we create or link networks of co-dependence?  What models of covariation should we adopt: linear, dominance, epistatic, topological?

Regine Debatty on Biology, Technology and Art

Regine Debatty discusses biology, art, and technology

Organelle View 2: the cell cycle

Yeast Cell Cycle


Here is a new visualization of the cell cycle using a combination of Virtual Reality Markup Language (VRML), Flash, and database-driven graphics. This new version from Chris Landau and Jamie Cope’s nformation design demonstrates the yeast cell cycle in 3D cycle stages along with educational information about the process.

Try zooming in and see changes in the nucleus as the cycle progresses.

Yeast Cell Nucleus During Metaphase


This project started as a collaboration at the University of Michigan with Anuj Kumar’s lab in the Life Sciences Institute and first led to the OrganelleView project.

In the Nature of Experiment


IN THE NATURE OF THE EXPERIMENT from srishti on Vimeo.

This is a short video about the Center for Experimental Media Arts, the lab where I work.

Connectivity is Beautiful

Communicating with plants, environmental sensing, crowd-sourced science, ecosystem monitoring, when species meet…

BotanicallsTwitter

Botanicalls_Twitter

Biology, Art, and Witnessing

tiara or crown of thorns?

This afternoon we concluded a week-long workshop in the so-called bioarts (go here for a nuanced discussion of the term) at the National Center for Biological Sciences (NCBS) in Bangalore, India. The workshop, conducted by Symbiotica and organized through a collaboration between NCBS, The Arts Catalyst and the Center for Experimental Media Art at the Srishti School of Art Design and Technology, brought together both Indian and international artists to engage with the tools of biotechnology as a way of investigating opportunities for research at the intersections of biology and art practice.

The capstone to the week was a community discussion among the participants and graduate students and faculty from NCBS. The conversation wa quite lively as it had been all week beginning with a opening keynote from Oron Catts about bioart and its role in cultural and scientific discourse.

Mukund Thattai moderated the discussion and acted as a provocateur by highlighting the potential for artists to become long-term interlocutors within the NCBS community. He particularly asked for skeptics of this art/biology engagement to share their concerns. Some of questions and concerns raised were:

  • How does the arts research percolate ‘down’ into culture given that these are two “ivory towers” largely speaking to each other?
  • Why is it that artists seem to be so vague in their proposals, seemingly lacking the precision of language to communicate ideas?
  • That the sciences practiced in institutions like NCBS are not intended for the average person and that possibly they shouldn’t be involved in it’s production because of the responsibility involved.
  • That the artworks produced appear to be superficial.
  • That the ideas or concepts presented through the work are already known and aren’t progressive enough to indicate value.
  • That biological research is drawing on ancient and traditional ways of knowing that largely obviate the need for any questioning of its categories and ways of understanding life.
  • That biologists just need to become better communicators and all of the problems associated with, e.g. acceptance of evolution, will disappear (this was actually raised during our first day’s interaction with the NCBS community).

These questions were sincere and engaging, and I was happy that there was such a good turnout to discuss these issues. People shared many different perspectives that varied widely in their desire for further such engagements, different models of engagement, and skepticism for the value of the kinds of activities that we were engaged in.

I was somewhat restrained from entering the fray directly because one of my main goals is to elicit the widest possible display of concerns from a community like this. Sometimes I feel it is better to just listen and use the issues raised as areas for getting tactically involved.

This brings me to a rationale for art/science engagement that I think deals with many of the concerns raised. Art, when engaged with biology, performs a social function of ‘witnessing.’ Steven Shapin and Simon Schaffer (Leviathan and the Air Pump, 1985) highlights this process in their analysis of Robert Boyle’s experiments with pneumatics and Thomas Hobbes’s critiques of his experimental program. They describe three processes that effectively multiply witnesses to experimentation and the resulting production of scientific knowledge: 1) facilitating replication–so that users can perform experiments themselves, 2) performance of experiments in a social space–i.e. sharing in the embodied experience, and (perhaps most importantly) 3)virtual witnessing–i.e. production in a user’s mind an image of the experimental scene such that it obviate the need for direct witness.

In the context of the workshop, I think this process of witnessing is increasingly relevant for the production of the biological program and its social contract with society. On the one hand, by teaching artists to use the tools of biology, Symbiotica creates an expectation that non-specialists could theoretically repeat experiments for themselves and verify their validity. Indeed, simple hypothesis testing was performed using environmental sampling of microorganisms and transformation of E. coli with a green fluorescent protein marker. Another example where replication of an experimental program is facilitated comes from the Critical Art Ensemble’s Marching Plague in which US military experiments in biowarfare were replicated with a critical eye for how the results did or did not support defense practice and the politicization of biotechnology. Each of these examples demonstrate how the practices of biology can be effectively replicated to allow for a wider social engagement of science and it’s relationship to other social groups and cultural concerns.

The second aspect of witnessing in shared spaces is perhaps the easiest to show. There were twenty residents at NCBS during the week, engaging in shared processes, visiting labs, and discussing the methods and implications of biological research in India. There’s a worldwide trend of artists working in labs with organizations. Kevin Kelly has a nice list of these residencies here.

What follows from these forms of replication and shared space is the dissemination of a virtual reality of the experimental program. I think that what comes out of artists’ engagement is a type of circumstantial evidence for scientifically-produced knowledge. It relies not on fact or even certainty but solely the residue of artistic engagement. Shapin and Schaffer point to these as circumstantial, stylized, accounts that do not exist as pure forms but instead as publicly acknowledged moves towards or away from “the reporting of contingencies.” Contingencies here means events or things that might jeopardize the validity of the experiment. By allowing the full spectrum of the experimental ’scene’–perhaps through the inclusion of additional perspectives, political persuasions, or ideas–a better picture of experimentation and its context can be understood. The CEMA blog this week documented the workshop in detail. How often do you see that level of detail in the daily working of, say, a genetics lab? Consider also how art exports knowledge into other spaces and disciplines, either though its images or simply through the engagement itself.

Reflecting on all of this (and I’m tired now), I think one of the interesting questions to pursue is to ask what difference artistic engagement makes along each of these three axes. Does it differ from other methods of communication, and if so what are the behaviors and practices that make it so?

Food for Wisdom

Design and the Elastic Mind is a new show that has opened up at the MOMA that I would very much like to see. It would be great to hear any responses from readers that had the chance to attend.

Finally, an intelligent viewfinder for genomic information

I ran across this today while searching for some mitochondrial gene information. It’s the MitoWheel (re:blogged via pimm). Gábor Zsurka, a mitochondrial geneticist, produced it in flash with actionscript.

click image to visit

When compared to, say, The National Center for Biotechnology Information’s mapviewer of human mitochondria, the difference and accessibility are unmistakable.

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